Table 1 Summary of genome assembly and annotation of A. eriantha
From: Telomere-to-telomere and haplotype-resolved genome of the kiwifruit Actinidia eriantha
Genomic feature | MDHAPA | MDHAPB | White | Wild |
|---|---|---|---|---|
Total size of assembled contigs (Mb) | 633 | 622 | 690.4 | 655 |
Number of contigs | 237 | 185 | 4076 | / |
N50 value of contigs length (Mb) | 21 | 18 | 0.54 | 2 |
Total size of assembled genomes (Mb) | 619.3 | 611.7 | 690.6 | 657.1 |
Number of gaps | 2 | 1 | 2341 | 709 |
Number of gap-close chromosomes | 27 | 28 | 0 | 0 |
Number of telomeres (pairs) | 24 | 25 | / | / |
Number of definite centromeres | 29 | 29 | / | / |
TE size (%) | 40.92 | 41.11 | 43.32 | 41.29 |
GC content (%) | 35.67 | 35.68 | / | / |
Genome BUSCOs (%) | 99 | 99.2 | 93.8 | 93.2 |
LTR assembly index score | 21.52 | 20.45 | / | / |
Number of genes | 46,008 | 47,184 | 42,988 | 41,521 |
Gene BUSCOs (%) | 92 | 91.5 | / | / |
QV | 59.60 | 50.93 | / | / |