Table 2 Differentially expressed genes (DEGs) associated to hormones
Category | Gene Identification | Putative Function | Log2 Fold Change shn2/WT | q value |
|---|---|---|---|---|
Gibberellin | Solyc12g006460 | GA ent-kaurenoate oxidase | 4.26 | 2.5E-249 |
Solyc07g056670 | Gibberellin 2-oxidase | -3.52 | 4.2E-46 | |
Solyc09g074270 | Gibberellin receptor | 2.34 | 1.1E-87 | |
Solyc04g017720 | Gibberellin regulated protein GASA6 | -2.04 | 2.3E-17 | |
Solyc04g078195 | Gibberellin-regulated protein | 1.12 | 5.0E-84 | |
Ethylene synthesis and signalling | Solyc07g049550 | 1-aminocyclopropane-1-carboxylate oxidase 2 ACO2 | -3.35 | 3.8E-26 |
Solyc07g026650 | 1-aminocyclopropane-1-carboxylate oxidase 5 ACO5 | -1.47 | 2.3E-13 | |
Solyc02g091990 | Aminocyclopropane-1-carboxylate synthase 3 ACS3 | 3.48 | 1.4E-74 | |
Solyc09g089610 | Ethylene receptor-like protein ETR6 | -1.81 | 5.3E-38 | |
Ethylene response | Solyc10g006130 | EAR motif SlERF36 | 1.30 | 3.1E-135 |
Solyc05g052030 | Ethylene response factor 4 | -3.90 | 8.6E-42 | |
Solyc03g093610 | Ethylene response factor A.2 | 2.42 | 3.0E-144 | |
Solyc04g014530 | Ethylene response factor C.2 | -1.08 | 7.0E-14 | |
Solyc02g077370 | Ethylene response factor C.5 | 1.74 | 2.1E-29 | |
Solyc03g093560 | Ethylene response factor C.6 | 2.32 | 2.5E-35 | |
Solyc01g108240 | Ethylene response factor D.3 | 3.96 | 0.0E + 00 | |
Solyc10g050970 | Ethylene response factor D.4 | 4.26 | 0.0E + 00 | |
Solyc07g053740 | Ethylene response factor F.4 | 1.29 | 2.1E-20 | |
Solyc05g051200 | Ethylene-responsive factor 1 | -2.02 | 6.8E-31 | |
Solyc04g011440 | Ethylene-responsive heat shock protein cognate 70 | 2.44 | 0.0E + 00 | |
Solyc02g070040 | Ethylene-responsive nuclear protein ERT2 | 4.10 | 3.8E-135 | |
Solyc08g080630 | Ethylene-responsive proteinase inhibitor 1 | -7.90 | 4.6E-25 | |
Solyc12g056980 | Ethylene-responsive transcription factor | -1.18 | 4.6E-15 | |
Solyc11g012980 | Ethylene-responsive transcription factor | 1.52 | 1.2E-62 | |
Solyc06g035700 | Ethylene-responsive transcription factor | 3.60 | 5.2E-59 | |
Solyc11g042560 | Ethylene-responsive transcription factor | 5.27 | 3.6E-56 | |
Solyc08g082210 | Ethylene-responsive transcription factor | -1.43 | 2.3E-43 | |
Solyc12g009240 | Ethylene-responsive transcription factor | 1.26 | 3.2E-107 | |
Solyc01g090560 | Ethylene-responsive transcription factor | 1.60 | 3.3E-30 | |
Solyc01g090340 | Ethylene-responsive transcription factor 2 | 3.88 | 3.5E-77 | |
Solyc02g077840 | Ethylene-responsive transcription factor 4 | 1.17 | 1.1E-18 | |
Solyc08g078190 | Ethylene-responsive transcription factor 5 | 1.15 | 1.7E-32 | |
Solyc03g093550 | Ethylene-responsive transcription factor 5 | 1.62 | 4.6E-72 | |
Solyc03g093540 | Ethylene-responsive transcription factor 5 | 2.28 | 6.1E-12 | |
Solyc04g078640 | Ethylene-responsive transcription factor RAP2-1 | -1.85 | 8.0E-11 | |
Auxin synthesis, transport and response | Solyc06g062920 | Auxin-regulated dual specificity cytosolic kinase | 2.57 | 4.1E-236 |
Solyc03g120380 | Auxin-regulated IAA19 | 1.51 | 2.0E-37 | |
Solyc06g008580 | Auxin-regulated IAA22 | 1.69 | 2.4E-22 | |
Solyc08g021820 | Auxin-regulated IAA29 | -2.31 | 5.2E-31 | |
Solyc12g096570 | Auxin-regulated organ size gene | -4.27 | 1.6E-31 | |
Solyc06g075690 | Auxin-regulated protein AF416289 | 4.87 | 5.5E-203 | |
Solyc04g053010 | Auxin-responsive protein SAUR65 | 1.56 | 3.4E-74 | |
Solyc01g099840 | Dormancy/auxin associated protein | -1.15 | 1.3E-44 | |
Solyc10g079640 | IAA-amino acid hydrolase ILR1-like 6 | 1.74 | 2.1E-76 | |
Solyc06g059730 | PIN6 | 6.11 | 3.3E-51 | |
Solyc01g110920 | Small auxin up-regulated RNA26 | -1.06 | 2.0E-18 | |
Solyc04g081250 | Small auxin up-regulated RNA51 | -1.39 | 2.4E-17 | |
Solyc04g081270 | Small auxin up-regulated RNA52 | -1.93 | 8.6E-24 | |
Abscisic Acid | Solyc02g084850 | Abscisic acid environmental stress-inducible protein TAS14 | 1.13 | 3.8E-08 |
Solyc03g095780 | Abscisic acid receptor PYL4-like | 1.99 | 3.7E-48 | |
Solyc08g005610 | Cytochrome P450 CYP707A ABA | 3.18 | 4.3E-26 | |
Brassinosteroid | Solyc02g071990 | Brassinosteroid signaling positive regulator-related protein BES1/BZR1 | 1.20 | 1.9E-55 |
Solyc07g062260 | Brassinosteroid signaling positive regulator-related protein BES1/BZR1 | 1.55 | 6.4E-34 | |
Cytokinin | Solyc11g069570 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase | 1.26 | 8.0E-12 |
Jasmonate | Solyc09g061840 | 3-ketoacyl-CoA thiolase peroxisomal-like | 1.02 | 2.8E-26 |
Solyc07g006890 | Cytochrome P450 CYP94B jasmonate | 3.01 | 0.0E + 00 | |
Solyc12g009220 | Jasmonate ZIM-domain protein 1 | 6.33 | 2.1E-139 | |
Solyc07g042170 | Jasmonate ZIM-domain protein 3 | 1.82 | 3.9E-187 | |
Solyc08g076930 | Jasmonic acid 3 | 1.11 | 3.2E-76 |