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Table 1 Differentially expressed genes (DEGs) associated to cuticle modifications and cell wall polysaccharides

From: The SlSHN2 transcription factor contributes to cuticle formation and epidermal patterning in tomato fruit

Category

Gene Identification

Putative Function

Log2 Fold Change shn2/WT

q value

Wax Biosynthesis

Solyc05g013220

Ketoacyl-CoA synthase KCS

-1.97

5.0E-62

Solyc06g074390

Fatty acyl-CoA reductase FAR1

1.24

3.5E-17

Solyc03g117800

ECERIFERUM 3 CER3

-1.28

6.4E-58

Solyc10g080840

Cytochrome P450 MAH1

-1.86

8.6E-209

Cutin Biosynthesis

Solyc08g081220

Cytochrome P450 CYP86A69 CD3

-2.20

1.3E-254

Solyc04g082380

Cytochrome P450 CYP86A8-like

-1.10

4.4E-08

Solyc09g014350

Glycerol-3-phosphate acyltransferase GPAT6

-1.20

8.9E-69

Lipid Transport

Solyc10g075100

Non-specific lipid-transfer protein LTP2_1e

2.98

0.0E + 00

Solyc09g018010

Non-specific lipid-transfer protein LTP2_2

1.37

6.9E-16

Solyc10g075110

Non-specific lipid-transfer protein LTP2_1f

2.50

8.4E-31

Solyc08g067540

Non-specific lipid-transfer protein

1.57

3.4E-07

Solyc05g015490

Plant lipid transfer protein LTPG1

-3.37

7.0E-88

Polymerization

Solyc02g071610

GDSL esterase/lipase

1.58

7.3E-93

Solyc02g071700

GDSL esterase/lipase

2.41

2.1E-50

Solyc07g049440

GDSL esterase/lipase

-1.88

0.0E + 00

Solyc03g121180

GDSL esterase/lipase

1.08

6.8E-74

Solyc10g076740

GDSL esterase/lipase CPRD49

-1.10

8.9E-29

Solyc11g006250

GDSL esterase/lipase CUS1

1.22

1.4E-69

Solyc06g083650

GDSL esterase/lipase CUS4

-1.12

1.1E-33

Solyc08g008610

Alpha/beta-Hydrolases superfamily protein BDG1

3.53

7.1E-151

Regulation

Solyc02g088190

SlMIXTA-like

-1.08

1.0E-59

Phenylpropanoid Pathway

Solyc05g056170

Phenylalanine ammonia-lyase

-1.84

1.6E-122

Solyc09g007890

Phenylalanine ammonia-lyase

1.17

4.8E-87

Solyc10g086180

Phenylalanine ammonia-lyase

1.57

3.3E-42

Solyc09g007910

Phenylalanine ammonia-lyase

2.47

2.8E-202

Solyc00g500353

Phenylalanine ammonia-lyase

4.59

0.0E + 00

Solyc09g007920

Phenylalanine ammonia-lyase

1.08

7.8E-84

Solyc02g093230

Caffeoyl-CoA O-methyltransferase

1.78

9.9E-34

Solyc02g093250

Caffeoyl-CoA O-methyltransferase

1.79

2.9E-50

Solyc09g091510

Chalcone synthase 1 CHS1

1.91

6.6E-121

Solyc01g111070

Chalcone synthase-like

1.32

3.6E-30

Cell Wall

Solyc12g015770

Cellulose synthase

-2.00

3.7E-83

Solyc07g043390

Cellulose synthase

1.67

5.3E-41

Solyc03g097050

Cellulose synthase

3.96

0.0E + 00

Solyc02g089640

Cellulose-synthase-like C4

1.71

1.8E-189

Solyc01g065530

COBRA-like protein

1.92

2.2E-221

Solyc08g081620

Endo-1,4-beta-glucanase precursor

-1.05

1.9E-07

Solyc08g082250

Endo-beta-1,4-D-glucanase Cel8

1.01

7.5E-88

Solyc07g049300

Endoglucanase

1.18

1.5E-61

Solyc07g064870

Endoglucanase

1.59

5.1E-71

Solyc03g071570

Pectate lyase

1.29

3.0E-60

Solyc09g091430

Pectate lyase

1.90

9.2E-102

Solyc09g061890

Pectate lyase

2.26

5.4E-231

Solyc04g082140

Pectinesterase

1.31

4.6E-116

Solyc06g009190

Pectinesterase

1.20

7.4E-36

Solyc03g123620

Pectinesterase

2.71

0.0E + 00

Solyc03g083730

Plant invertase/pectin methylesterase inhibitor

1.65

2.8E-12

Solyc12g010540

UDP-glucuronate 4-epimerase 4

1.70

3.9E-135

Solyc05g051260

1,4-beta-xylanase

2.40

8.5E-07

Solyc03g093080

Xyloglucan endotransglucosylase/hydrolase

3.50

0.0E + 00

Solyc07g055990

Xyloglucan endotransglucosylase/hydrolase

4.05

4.4E-208

Solyc02g080160

Xyloglucan endotransglucosylase/hydrolase

1.62

3.6E-101

Solyc07g056000

Xyloglucan endotransglucosylase/hydrolase

3.09

0.0E + 00

Solyc03g093110

Xyloglucan endotransglucosylase/hydrolase

3.96

0.0E + 00

Solyc07g009380

Xyloglucan endotransglucosylase-hydrolase 2

-1.14

3.0E-86

Solyc03g093130

Xyloglucan endotransglucosylase-hydrolase 3

4.19

0.0E + 00

Solyc12g011030

Xyloglucan endotransglucosylase-hydrolase 9

3.02

5.7E-234

Solyc12g017240

Xyloglucan endo-transglycosylase B1

2.73

0.0E + 00

Solyc07g044960

Xyloglucan galactosyltransferase KATAMARI1

3.89

6.7E-72

Solyc03g093120

Xyloglucan:xyloglucosyl transferase TCH4

4.87

0.0E + 00

Solyc06g074670

UDP-apiose/UDP-xylose synthase

2.57

0.0E + 00

  1. DEGs in the exocarp of WT-like and shn2 20 DPA fruit. Genes were assigned manually to functional categories. Annotations are from SGN