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Table 1 Differentially expressed genes (DEGs) associated to cuticle modifications and cell wall polysaccharides

From: The SlSHN2 transcription factor contributes to cuticle formation and epidermal patterning in tomato fruit

Category Gene Identification Putative Function Log2 Fold Change shn2/WT q value
Wax Biosynthesis Solyc05g013220 Ketoacyl-CoA synthase KCS -1.97 5.0E-62
Solyc06g074390 Fatty acyl-CoA reductase FAR1 1.24 3.5E-17
Solyc03g117800 ECERIFERUM 3 CER3 -1.28 6.4E-58
Solyc10g080840 Cytochrome P450 MAH1 -1.86 8.6E-209
Cutin Biosynthesis Solyc08g081220 Cytochrome P450 CYP86A69 CD3 -2.20 1.3E-254
Solyc04g082380 Cytochrome P450 CYP86A8-like -1.10 4.4E-08
Solyc09g014350 Glycerol-3-phosphate acyltransferase GPAT6 -1.20 8.9E-69
Lipid Transport Solyc10g075100 Non-specific lipid-transfer protein LTP2_1e 2.98 0.0E + 00
Solyc09g018010 Non-specific lipid-transfer protein LTP2_2 1.37 6.9E-16
Solyc10g075110 Non-specific lipid-transfer protein LTP2_1f 2.50 8.4E-31
Solyc08g067540 Non-specific lipid-transfer protein 1.57 3.4E-07
Solyc05g015490 Plant lipid transfer protein LTPG1 -3.37 7.0E-88
Polymerization Solyc02g071610 GDSL esterase/lipase 1.58 7.3E-93
Solyc02g071700 GDSL esterase/lipase 2.41 2.1E-50
Solyc07g049440 GDSL esterase/lipase -1.88 0.0E + 00
Solyc03g121180 GDSL esterase/lipase 1.08 6.8E-74
Solyc10g076740 GDSL esterase/lipase CPRD49 -1.10 8.9E-29
Solyc11g006250 GDSL esterase/lipase CUS1 1.22 1.4E-69
Solyc06g083650 GDSL esterase/lipase CUS4 -1.12 1.1E-33
Solyc08g008610 Alpha/beta-Hydrolases superfamily protein BDG1 3.53 7.1E-151
Regulation Solyc02g088190 SlMIXTA-like -1.08 1.0E-59
Phenylpropanoid Pathway Solyc05g056170 Phenylalanine ammonia-lyase -1.84 1.6E-122
Solyc09g007890 Phenylalanine ammonia-lyase 1.17 4.8E-87
Solyc10g086180 Phenylalanine ammonia-lyase 1.57 3.3E-42
Solyc09g007910 Phenylalanine ammonia-lyase 2.47 2.8E-202
Solyc00g500353 Phenylalanine ammonia-lyase 4.59 0.0E + 00
Solyc09g007920 Phenylalanine ammonia-lyase 1.08 7.8E-84
Solyc02g093230 Caffeoyl-CoA O-methyltransferase 1.78 9.9E-34
Solyc02g093250 Caffeoyl-CoA O-methyltransferase 1.79 2.9E-50
Solyc09g091510 Chalcone synthase 1 CHS1 1.91 6.6E-121
Solyc01g111070 Chalcone synthase-like 1.32 3.6E-30
Cell Wall Solyc12g015770 Cellulose synthase -2.00 3.7E-83
Solyc07g043390 Cellulose synthase 1.67 5.3E-41
Solyc03g097050 Cellulose synthase 3.96 0.0E + 00
Solyc02g089640 Cellulose-synthase-like C4 1.71 1.8E-189
Solyc01g065530 COBRA-like protein 1.92 2.2E-221
Solyc08g081620 Endo-1,4-beta-glucanase precursor -1.05 1.9E-07
Solyc08g082250 Endo-beta-1,4-D-glucanase Cel8 1.01 7.5E-88
Solyc07g049300 Endoglucanase 1.18 1.5E-61
Solyc07g064870 Endoglucanase 1.59 5.1E-71
Solyc03g071570 Pectate lyase 1.29 3.0E-60
Solyc09g091430 Pectate lyase 1.90 9.2E-102
Solyc09g061890 Pectate lyase 2.26 5.4E-231
Solyc04g082140 Pectinesterase 1.31 4.6E-116
Solyc06g009190 Pectinesterase 1.20 7.4E-36
Solyc03g123620 Pectinesterase 2.71 0.0E + 00
Solyc03g083730 Plant invertase/pectin methylesterase inhibitor 1.65 2.8E-12
Solyc12g010540 UDP-glucuronate 4-epimerase 4 1.70 3.9E-135
Solyc05g051260 1,4-beta-xylanase 2.40 8.5E-07
Solyc03g093080 Xyloglucan endotransglucosylase/hydrolase 3.50 0.0E + 00
Solyc07g055990 Xyloglucan endotransglucosylase/hydrolase 4.05 4.4E-208
Solyc02g080160 Xyloglucan endotransglucosylase/hydrolase 1.62 3.6E-101
Solyc07g056000 Xyloglucan endotransglucosylase/hydrolase 3.09 0.0E + 00
Solyc03g093110 Xyloglucan endotransglucosylase/hydrolase 3.96 0.0E + 00
Solyc07g009380 Xyloglucan endotransglucosylase-hydrolase 2 -1.14 3.0E-86
Solyc03g093130 Xyloglucan endotransglucosylase-hydrolase 3 4.19 0.0E + 00
Solyc12g011030 Xyloglucan endotransglucosylase-hydrolase 9 3.02 5.7E-234
Solyc12g017240 Xyloglucan endo-transglycosylase B1 2.73 0.0E + 00
Solyc07g044960 Xyloglucan galactosyltransferase KATAMARI1 3.89 6.7E-72
Solyc03g093120 Xyloglucan:xyloglucosyl transferase TCH4 4.87 0.0E + 00
Solyc06g074670 UDP-apiose/UDP-xylose synthase 2.57 0.0E + 00
  1. DEGs in the exocarp of WT-like and shn2 20 DPA fruit. Genes were assigned manually to functional categories. Annotations are from SGN