Table 2 Examples of known structural variants in tomato

Various

Various

Tomato domestication

(Blanca et al., 2015; Lin et al., 2014)

sb1/sb3

Tandem duplication

Changes in tomato branching patterns

(Soyk et al., 2019a; Soyk et al., 2019b)

fas

Large inversion

Increased fruit size

(Xu et al., 2015)

CSR

Deletion

Increased fruit weight

(Mu et al., 2017)

LNK2

Deletion

Change in circadian rhythm

(Muller et al., 2018)

Fls3

SNPs, domain swaps

Loss of function

(Hind et al., 2016; Roberts et al., 2020; Roberts et al., 2019)

Fls2.2

Tandem duplication of Fls2.1(paralog)

Loss of function

(Roberts et al., 2019; Jacobs et al., 2017)

Cf-2 and Cf-5

Copy number variation

Race-specific resistance

(Dixon et al., 1998)

exCNLs

Tandem duplications

Subclass of NLRs in tomato and its wild relatives with extended N-termini

(Seong et al., 2020)