Table 1 The 15 agronomic traits related to yield traits, quality traits and tuber appearance. Candidate loci with association signals were identified by GWAS analysis. Model, the analysis model created with GWASpoly; Chr, the chromosome on which the genes are located; Position, the physical position on chromosome, P-value representing the significant difference (−log10P)
From: Resequencing and genome-wide association studies of autotetraploid potato
Trait | Model | Chr | Position | P-value |
|---|---|---|---|---|
Commercial potato number | additive | chr01 | 53,546,671 | 7.751759221 |
additive | chr08 | 9,289,382 | 7.761336087 | |
Commercial potato weight | additive | chr06 | 39,598,719 | 7.635390056 |
Commodity rate per plant | additive | chr01 | 1,441,579 | 8.379762405 |
additive | chr05 | 8,029,132 | 7.826109398 | |
additive | chr05 | 10,378,690 | 7.722277807 | |
additive | chr07 | 20,336,146 | 7.640000989 | |
Contents of amylopectin | additive | chr01 | 76,598,419 | 7.454226593 |
additive | chr09 | 39,683,726 | 8.201341041 | |
Contents of amylose | additive | chr01 | 76,598,419 | 7.454226593 |
additive | chr09 | 39,683,726 | 8.201341041 | |
Contents of fructose | additive | chr01 | 1,671,891 | 11.2415703 |
additive | chr04 | 68,545,453 | 7.496898574 | |
additive | chr06 | 51,907,734 | 7.494746998 | |
Contents of reducing sugar | additive | chr04 | 5,121,449 | 8.068176837 |
Small-sized tuber number | additive | chr01 | 46,660,804 | 8.363685848 |
additive | chr08 | 18,192,967 | 8.375380861 | |
additive | chr09 | 38,612,402 | 7.756347052 | |
additive | chr09 | 65,917,552 | 7.976222839 | |
additive | chr12 | 2,113,621 | 8.18878601 | |
additive | chr12 | 11,738,981 | 7.646727896 | |
Small-sized tuber weight | additive | chr02 | 25,319,961 | 8.039384488 |
additive | chr03 | 39,235,998 | 9.17556828 | |
additive | chr04 | 4,433,795 | 7.449181657 | |
additive | chr05 | 10,344,300 | 8.275191974 | |
additive | chr06 | 36,098,504 | 7.84763694 | |
additive | chr07 | 56,127,633 | 7.647772326 | |
additive | chr08 | 3,879,313 | 9.571811502 | |
additive | chr08 | 39,697,219 | 8.602640471 | |
additive | chr09 | 13,855,548 | 7.767820029 | |
additive | chr10 | 56,486,553 | 8.87584262 | |
additive | chr11 | 8,420,908 | 7.506651967 | |
additive | chr11 | 10,077,049 | 7.897851041 | |
additive | chr11 | 12,782,672 | 7.98400409 | |
additive | chr11 | 43,116,815 | 8.094322885 | |
additive | chr12 | 7,348,885 | 9.309574598 | |
Total commodity rate | additive | chr07 | 7,063,854 | 7.666711254 |
Tuber aspect ratio | additive | chr06 | 49,123,341 | 11.83625679 |
additive | chr07 | 55,669,850 | 8.023519864 | |
additive | chr09 | 21,823,977 | 7.632673794 | |
additive | chr10 | 8,238,500 | 7.657560212 | |
additive | chr10 | 50,375,842 | 13.41468486 | |
additive | chr12 | 57,239,887 | 7.691485609 | |
Tuber eye depth | additive | chr10 | 49,591,276 | 9.441733516 |
Tuber length | additive | chr09 | 25,598,280 | 7.486629211 |
additive | chr09 | 45,761,555 | 7.474995731 | |
additive | chr10 | 50,067,847 | 7.770368725 | |
Tuber number per plant | additive | chr08 | 8,407,989 | 7.809295303 |
Tuber thickness | additive | chr01 | 9,983,088 | 7.677787051 |
additive | chr05 | 52,293,045 | 8.159705715 |