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Table 1 The 15 agronomic traits related to yield traits, quality traits and tuber appearance. Candidate loci with association signals were identified by GWAS analysis. Model, the analysis model created with GWASpoly; Chr, the chromosome on which the genes are located; Position, the physical position on chromosome, P-value representing the significant difference (−log10P)

From: Resequencing and genome-wide association studies of autotetraploid potato

Trait Model Chr Position P-value
Commercial potato number additive chr01 53,546,671 7.751759221
additive chr08 9,289,382 7.761336087
Commercial potato weight additive chr06 39,598,719 7.635390056
Commodity rate per plant additive chr01 1,441,579 8.379762405
additive chr05 8,029,132 7.826109398
additive chr05 10,378,690 7.722277807
additive chr07 20,336,146 7.640000989
Contents of amylopectin additive chr01 76,598,419 7.454226593
additive chr09 39,683,726 8.201341041
Contents of amylose additive chr01 76,598,419 7.454226593
additive chr09 39,683,726 8.201341041
Contents of fructose additive chr01 1,671,891 11.2415703
additive chr04 68,545,453 7.496898574
additive chr06 51,907,734 7.494746998
Contents of reducing sugar additive chr04 5,121,449 8.068176837
Small-sized tuber number additive chr01 46,660,804 8.363685848
additive chr08 18,192,967 8.375380861
additive chr09 38,612,402 7.756347052
additive chr09 65,917,552 7.976222839
additive chr12 2,113,621 8.18878601
additive chr12 11,738,981 7.646727896
Small-sized tuber weight additive chr02 25,319,961 8.039384488
additive chr03 39,235,998 9.17556828
additive chr04 4,433,795 7.449181657
additive chr05 10,344,300 8.275191974
additive chr06 36,098,504 7.84763694
additive chr07 56,127,633 7.647772326
additive chr08 3,879,313 9.571811502
additive chr08 39,697,219 8.602640471
additive chr09 13,855,548 7.767820029
additive chr10 56,486,553 8.87584262
additive chr11 8,420,908 7.506651967
additive chr11 10,077,049 7.897851041
additive chr11 12,782,672 7.98400409
additive chr11 43,116,815 8.094322885
additive chr12 7,348,885 9.309574598
Total commodity rate additive chr07 7,063,854 7.666711254
Tuber aspect ratio additive chr06 49,123,341 11.83625679
additive chr07 55,669,850 8.023519864
additive chr09 21,823,977 7.632673794
additive chr10 8,238,500 7.657560212
additive chr10 50,375,842 13.41468486
additive chr12 57,239,887 7.691485609
Tuber eye depth additive chr10 49,591,276 9.441733516
Tuber length additive chr09 25,598,280 7.486629211
additive chr09 45,761,555 7.474995731
additive chr10 50,067,847 7.770368725
Tuber number per plant additive chr08 8,407,989 7.809295303
Tuber thickness additive chr01 9,983,088 7.677787051
additive chr05 52,293,045 8.159705715